When the Bee stages datasets on the processing scratch space (cluster) it creates for each dataset a metadata properties file containing some dataset information coming from OpenBIS.
The file is to be found in the dataset cache directory and its name is bee_storage_provider.properties
.
E.g.:
...../BeeDatasetCache/20121012004835955-27454/bee_storage_provider.properties
In property with name DATASET_ID
.
In property with name DATASET_TYPE
.
In property with name EXPERIMENT_NAME
.
In property with name SAMPLE_NAME
.
The sample name will be extracted from the dataset itself, or from its container if the dataset is a contained one.
Both, the names and values of the properties are provided by OpenBIS.
If the dataset is a contained dataset, the metadata file will contain the properties from the dataset itself and the properties from its container.
If the dataset is not a contained dataset, the metadata file will contain the properties from the dataset itself.
Examples are taken from the OpenBIS instance installed in STAGE.
#Tue Sep 10 16:17:59 GMT+01:00 2013 DATASET_ID=20130215175757007-40162 SAMPLE_NAME=/INFECTX/DZ07-1K IBRAIN2.DATASET.ID=2348 INSTRUMENT.ID=BS-IX1 DATASET_TYPE=HCS_IMAGE_RAW FILESIZE_SUM=24181862 IMAGE_COUNT=13824 EXPERIMENT_NAME=/INFECTX/LISTERIA_TEAM/LISTERIA-DP-G1 ACQUISITION.TIMESTAMP=03FC58BC CHANNEL_LIST=Cy3,Cy5,DAPI,GFP
#Wed Apr 10 16:30:23 GMT+02:00 2013 DATASET_ID=20121123170634713-34193 IBRAIN2.DATASET.ID=2131 IBRAIN2.MODULE.ORDER=1 SAMPLE_NAME=/BEE/KB2-09-1E DATASET_TYPE=CLUSTER_JOB_LOGS IBRAIN2.WORKFLOW.ID=61 IBRAIN2.PARENT.DATASET.ID=1955 IBRAIN2.WORKFLOW.NAME=VacciniaShdCrrVer010MD3R2011b IBRAIN2.PROCESS.ID=339 $ANALYSIS_PROCEDURE=VacciniaShdCrrVer010MD3R2011b (emmenlau) EXPERIMENT_NAME=/BEE/VACCINIA_TEAM/VACCINIA-AU-K1 IBRAIN2.WORKFLOW.AUTHOR=emmenlau