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beewm:devel:workflow_specification_syntax

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devel:workflow_specification_syntax [2014/05/28 13:32] – behullardevel:workflow_specification_syntax [2014/12/05 16:44] – [<files in_dir=... regex=... />] behullar
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     </input>     </input>
     <modules>     <modules>
-        <module name="String (required)" version="Regex pattern (required)" class="String (optional, defaults to ch.systemsx.bee.workflowmanager.module.MockModule)" required_runtime_minutes="Integer (optional)" required_memory_mb="Integer (optional)" >+        <module name="String (required)" version="Regex pattern (required)" class="String (optional, defaults to ch.systemsx.bee.workflowmanager.module.MockModule)" required_runtime_minutes="Integer (optional)" required_memory_mb="Integer (optional)" cpus_per_job="Integer (optional)">
             <params (optional)>             <params (optional)>
                 <param name="indexbuilder_dataset|indexbuilder_regex|indexes_per_job|indexes_start (required)" value="String (required)" />                 <param name="indexbuilder_dataset|indexbuilder_regex|indexes_per_job|indexes_start (required)" value="String (required)" />
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 If //false//, an empty directory will be created in the processing scratch space; in that case the dataset content will not be copied to scratch, only a directory with the expected name will be created there. If //false//, an empty directory will be created in the processing scratch space; in that case the dataset content will not be copied to scratch, only a directory with the expected name will be created there.
  
-:!: This feature is not implemented. The application behaves as this value would be set to true. To be discussed if it is needed, since the directory of a dataset could be specified as metadata or as variable.+==== <files in_dir="..." regex="..." /> ==== 
 +With this element, the files and/or directories to stage are selected. All the ''"files"'' elements defined in an output dataset will be evaluated. The files and/or directories selected will be the following: 
 +  * located in the ''"in_dir"'', as a subdirectory of the module's work directory; or located directly in the module's work directory if the ''"in_dir"'' attribute is empty. 
 +  * matching the regex expression specified in the ''"regex"'' attribute.
  
 ===== <module name="..."  ... > ===== ===== <module name="..."  ... > =====
beewm/devel/workflow_specification_syntax.txt · Last modified: 2016/05/20 12:11 by admin

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