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beewm:devel:workflow_specification_syntax

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devel:workflow_specification_syntax [2014/05/28 13:32] – behullarbeewm:devel:workflow_specification_syntax [2016/05/17 16:17] – external edit 127.0.0.1
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     </input>     </input>
     <modules>     <modules>
-        <module name="String (required)" version="Regex pattern (required)" class="String (optional, defaults to ch.systemsx.bee.workflowmanager.module.MockModule)" required_runtime_minutes="Integer (optional)" required_memory_mb="Integer (optional)" >+        <module name="String (required)" version="Regex pattern (required)" class="String (optional, defaults to ch.systemsx.bee.workflowmanager.module.MockModule)" required_runtime_minutes="Integer (optional)" required_memory_mb="Integer (optional)" cpus_per_job="Integer (optional)">
             <params (optional)>             <params (optional)>
                 <param name="indexbuilder_dataset|indexbuilder_regex|indexes_per_job|indexes_start (required)" value="String (required)" />                 <param name="indexbuilder_dataset|indexbuilder_regex|indexes_per_job|indexes_start (required)" value="String (required)" />
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 :!: This feature is not implemented. The application behaves as this value would be set to true. To be discussed if it is needed, since the directory of a dataset could be specified as metadata or as variable. :!: This feature is not implemented. The application behaves as this value would be set to true. To be discussed if it is needed, since the directory of a dataset could be specified as metadata or as variable.
 +
 +
 +==== <files in_dir="..." regex="..." /> ====
 +With this element, the files and/or directories to stage are selected. All the ''"files"'' elements defined in an output dataset will be evaluated. The files and/or directories selected will be the following:
 +  * located in the ''"in_dir"'', as a subdirectory of the module's work directory; or located directly in the module's work directory if the ''"in_dir"'' attribute is empty.
 +  * matching the regex expression specified in the ''"regex"'' attribute.
  
 ===== <module name="..."  ... > ===== ===== <module name="..."  ... > =====
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 Bee supports the use of variables in its workflow description file.\\ Bee supports the use of variables in its workflow description file.\\
 Variables are specified with the following terminology:  **''${variable_type.variable_name}''**.\\ Variables are specified with the following terminology:  **''${variable_type.variable_name}''**.\\
-Please check **[[devel:resolving_workflow_templates|Resolving Workflow Templates]]** for detailed information.+Please check **[[:beewm:devel:resolving_workflow_templates|Resolving Workflow Templates]]** for detailed information.
  
  
beewm/devel/workflow_specification_syntax.txt · Last modified: 2016/05/20 12:11 by admin

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