This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
devel:workflow_specification_syntax [2014/05/28 13:32] – behullar | beewm:devel:workflow_specification_syntax [2016/05/20 12:11] (current) – admin | ||
---|---|---|---|
Line 8: | Line 8: | ||
< | < | ||
< | < | ||
- | <dataset name=" | + | <dataset name=" |
.... | .... | ||
</ | </ | ||
</ | </ | ||
< | < | ||
- | <module name=" | + | <module name=" |
<params (optional)> | <params (optional)> | ||
<param name=" | <param name=" | ||
Line 50: | Line 50: | ||
< | < | ||
<dataset name=" | <dataset name=" | ||
- | <dataset name=" | + | <dataset name=" |
<dataset name=" | <dataset name=" | ||
</ | </ | ||
Line 152: | Line 152: | ||
When a process is started by submitting a particular workflow together with one or several input datasets, it will be checked that: | When a process is started by submitting a particular workflow together with one or several input datasets, it will be checked that: | ||
* the input dataset(s) identified by its storage ID exist in storage | * the input dataset(s) identified by its storage ID exist in storage | ||
- | * the input dataset(s) in storage have the same type as specified in the ''< | + | * the input dataset(s) in storage have the same type as specified in the ''< |
Line 162: | Line 162: | ||
==== <dataset type=" | ==== <dataset type=" | ||
- | Required. Corresponds to the dataset type provided by the storage. It is used for validation purposes. | + | Optional. Corresponds to the dataset type provided by the storage. It is used for validation purposes. |
==== <dataset stage=" | ==== <dataset stage=" | ||
Line 170: | Line 170: | ||
:!: This feature is not implemented. The application behaves as this value would be set to true. To be discussed if it is needed, since the directory of a dataset could be specified as metadata or as variable. | :!: This feature is not implemented. The application behaves as this value would be set to true. To be discussed if it is needed, since the directory of a dataset could be specified as metadata or as variable. | ||
+ | |||
+ | |||
+ | ==== <files in_dir=" | ||
+ | With this element, the files and/or directories to stage are selected. All the ''" | ||
+ | * located in the ''" | ||
+ | * matching the regex expression specified in the ''" | ||
===== <module name=" | ===== <module name=" | ||
Line 249: | Line 255: | ||
Bee supports the use of variables in its workflow description file.\\ | Bee supports the use of variables in its workflow description file.\\ | ||
Variables are specified with the following terminology: | Variables are specified with the following terminology: | ||
- | Please check **[[devel: | + | Please check **[[:beewm:devel: |